ReFramed documentation
======================

.. image:: ../reframed_logo.png

ReFramed is a Python 3 library for metabolic model simulation.

It currently supports **15** different constraint-based simulation methods (FBA variants), including
knockout simulation, thermodynamic analysis, protein allocation, transcriptomics integration, and community simulation.
Please read the following sections for more details.

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   installation
   basics
   simulation
   interfaces


.. toctree::
   :maxdepth: 1
   :caption: API:

   modules


Indices and tables
__________________

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`